WebbHi, Sorry for the late response. Thanks for the advice. And you were right, it was the file system, i ran braker in /tmp and it worked. Thanks WebbProtHint is a pipeline for generating hints for GeneMark-EX and AUGUSTUS from proteins of any evolutionary distance. If protein sequences are given on input, BRAKER runs …
Introduction to Braker2 - Bioinformatics Workbook
WebbManaging environments. With conda, you can create, export, list, remove, and update environments that have different versions of Python and/or packages installed in them. … Webb25 feb. 2024 · Conda is not an analogous tool in all respects, but for this, the steps should look familiar. # create your virtual environment conda create --name testenv # activate … henry sweet definition of language
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We recommend to use a relevant portion of OrthoDB protein database as thesource of reference protein sequences. For example, if your genome of interest is an insect, download arthropodaproteins: and concatenate proteins from all species into a single file: For other genomes of interest, you can select the most … Visa mer ProtHint inputs consist of: 1. Genomic sequence from the target species in multi-FASTA format 2. Reference protein sequences in multi-FASTA format The tool is applicable to complete as well as draft genome assemblies. … Visa mer To run ProtHint, use the following command: See the examplefolder for a sample input and output. To display a list of all available options, use: Frequently used options are: Visa mer ProtHint generates two main outputs: 1. prothint.gffGff file with all reported hints (introns, starts and stops) 2. evidence.gff High confidence … Visa mer WebbBuilding a conda package; Uploading a conda package; Sharing channels and packages; Configuring conda; Using installers, parcels and management packs; Working with data; … WebbProtHint software can be used for free, but doesn't allow redistribution and should be additionally installed on the machine where the BRAKER2 environment is. Download … henry sweet henry musical